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Tentative Course Schedule
| Week | Date | Subject | |
| 1 | 1/20 | Course Overview | |
| 1/22 | Learning Motif Models | |
| 2 | 1/27 | Learning Motif Models | |
| 1/29 | Learning Motif Models | |
| 3 | 2/3 | Learning CRM Models | |
| 2/5 | Learning CRM Models | |
| 4 | 2/10 | Learning CRM Models | |
| 2/12 | Learning CRM Models | |
| 5 | 2/17 | Gene Finding | |
| 2/19 | Gene Finding | |
| 6 | 2/24 | Gene Finding | |
| 2/26 | Gene Finding | |
| 7 | 3/3 | Gene Finding | |
| 3/5 | Gene Finding | |
| 8 | 3/10 | | Midterm (in class) |
| 3/12 | RNA-Seq | |
| 9 | 3/17 | Guest Lecture: Prof. Tony Gitter | |
| 3/19 |
RNA-Seq | Project Proposal Due |
| 10 | 3/24 | RNA Secondary Structure and SCFGs | |
| 3/26 | RNA Secondary Structure and SCFGs
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| Spring Break |
| 11 | 4/7 | RNA Secondary Structure and SCFGs | |
| 4/9 | RNA Secondary Structure and SCFGs | |
| 12 | 4/14 | Large-scale alignment | |
| 4/16 | Large-scale alignment | Project Progress Report Due |
| 13 | 4/21 | Large-scale alignment | |
| 4/23 | Comparative Network Analysis | |
| 14 | 4/28 | Genotype Analysis | |
| 4/30 | Genotype Analysis | |
| 15 | 5/5 | Protein Structure Prediction | |
| 5/7 | Protein Structure Prediction | |
| 5/10 | | Final Exam |
| 5/17 | | Project Report Due |
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